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Relating to Folds & Families
- Detailed Mapping of functions onto structures.
- Data directory function files
- Data directory structure files
- Associated function search dialog is available from form box at top of this page and PartsList homepage.
- Examples for 2SOD (detailed) and 6LDH (short).
- Connecting function to Multi-domain proteins
- Older site cross-referencing folds and functions (associated table giving number of functions per fold)
Relating to Microarray Experiments
- Preliminary GO/Expression Viewer (Analyzes correlation between GO categories and gene expression)
- Older site related to the above with correlations with MIPS functions and expression.
- Clustering of phenotype patterns (related to phenotypic function)
- Protein Chip Site (related to biochemical function)
- Comprehensive yeast subcellular localization site
Relating to Interactions & Metabolic Pathways
- Integrating Interactomes to get at function (extensively uses expression correlations)
- Defining function in terms of interactions [paper]
- Paper on pathway flux analysis
- Genecensus system for connecting expression and pathway fluxes [paper]
Links to Other Sites Related to Protein Function
PartsList Citation: Qian, J. et al. (2001) Nucleic Acids Research 29: 1750-64